JGI Xentr7.1 Models In Xenbase
- Where present, a gene page will display a snapshot of the corresponding Xentr 7.1 model in gbrowse. Clicking on this image will take
the user to the model in gbrowse. If the gene also has a Xentr 4.1 model, a link will appear underneath the 7.1 snapshot, View 4.1 Snapshot. Clicking this link will bring up the Xentr 4.1 snapshot for comparison. See the pax8 gene as an example
- The Xentr 7.1 gene and mRNA models also appear in the Sequence tab of a gene page. Clicking on the rocket icon will enable the user to run a Blast of the model sequence. Clicking on the magnifying glass icon will bring up the model sequence. Click here to see an example Sequence tab.
- A new Gbrowse data source has been created for Xentr7.1 genome assembly. The gene and transcript models represent version 7.2 annotation.
- Several tracks are available for viewing including Xenbase Gene Pages, NCBI Unigene clusters, Gurdon clusters and Affymetrix probes.
- Blast analysis can now be run on the Xentr7.1 scaffolds. Each hit provides a link to enable viewing in Gbrowse.
- Xentr7.2 transcript and protein model databases are also available in Blast. These databases can be queried singly and are also included in the xenopus nucleotide, tropicalis nucleotide, xenopus protein and tropicalis protein databases.
- Links to Xenbase gene pages will appear, where present, for Xentr 7.2 transcript and proteins model hits.
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